Recent Scientific Publications

As of July 1, 2024

Trouche, B., Schrieke, H., Duron, O., Eren, A. M., & Reveillaud, J. (2024). Wolbachia populations across organs of individual Culex pipiens: Highly conserved intra-individual core pangenome with inter-individual polymorphisms. ISME Communications, 4(1), ycae078. https://doi.org/10.1093/ismeco/ycae078

Brock, M. T., Morrison, H. G., Maignien, L., & Weinig, C. (2024). Impacts of sample handling and storage conditions on archiving physiologically active soil microbial communities. FEMS Microbiology Letters, fnae044. https://doi.org/10.1093/femsle/fnae044

Hanlon, R. T. (2024). Octopus cyanea, day octopus. In R. Rosa, I. G. Gleadall, G. J. Pierce, & R. Villanueva (Eds.), Octopus Biology and Ecology (pp. 61–74). Academic Press. https://doi.org/10.1016/B978-0-12-820639-3.00008-X

Casiano Rivera, C. V., Wallace, J. N., Fisher, G. E., & Morgan, J. R. (2024). Acute introduction of phosphoserine-129 α-synuclein induces severe swelling of mitochondria at lamprey synapses. microPublication Biology. https://doi.org/10.17912/micropub.biology.001206

Frangieh, C. J., Wilkinson, M. E., Strebinger, D., Strecker, J., Walsh, M. L., Faure, G., Yushenova, I. A., Macrae, R. K., Arkhipova, I. R., & Zhang, F. (2024). Internal initiation of reverse transcription in a Penelope-like retrotransposon. Mobile DNA, 15, 12. https://doi.org/10.1186/s13100-024-00322-z

Pelagalli, C., Sera, D.-J., DeGiorgis, J. A., & Cornely, K. (2024). Mycobacteriophage maravista: A cluster F1 phage discovered on Cape Cod, Massachusetts. Microbiology Resource Announcements, e00502-24. https://doi.org/10.1128/mra.00502-24

Rosa, R., Santos, C. P., Borges, F., Amodio, P., Amor, M., Bower, J. R., Caldwell, R. L., Di Cosmo, A., Court, M., Fiorito, G., Gestal, C., González, Á. F., Guerra, Á., Hanlon, R. T., Hofmeister, J. K. K., Ibáñez, C. M., Ikeda, Y., Imperadore, P., Kommritz, J. G., Kuba, M., Hall, K. C., Lajbner, Z., Leite, T. S., Lopes, V. M., Markaida, U., Moltschaniwskyj, N. A., Nabhitabhata, J., Ortiz, N., Otjacques, E., Pizzulli, F., Ponte, G., Polese, G., Raffini, F., Rosas, C., Roura, A., Sampaio, E., Segawa, S., Simakov, O., Sobrino, I., Storero, L. P., Voight, J. R., Williams, B. L., Zheng, X., Pierce, G. J., Villanueva, R., & Gleadall, I. G. (2024). Chapter 23—Past, present, and future trends in octopus research. In R. Rosa, I. G. Gleadall, G. J. Pierce, & R. Villanueva (Eds.), Octopus Biology and Ecology (pp. 421–454). Academic Press. https://doi.org/10.1016/B978-0-12-820639-3.00010-8

Zhou, Y., O’Meara, T., Cardon, Z. G., Wang, J., Sulman, B. N., Giblin, A. E., & Forbrich, I. (2024). Simulated plant-mediated oxygen input has strong impacts on fine-scale porewater biogeochemistry and weak impacts on integrated methane fluxes in coastal wetlands. Biogeochemistry. https://doi.org/10.1007/s10533-024-01145-z

Eckmann, C. A., Bachy, C., Wittmers, F., Strauss, J., Blanco-Bercial, L., Vergin, K. L., Parsons, R. J., Kudela, R. M., Johnson, R., Bolaños, L. M., Giovannoni, S. J., Carlson, C. A., & Worden, A. Z. (2024). Recurring seasonality exposes dominant species and niche partitioning strategies of open ocean picoeukaryotic algae. Communications Earth & Environment, 5, 266. https://doi.org/10.1038/s43247-024-01395-7

Haviland, K., Howarth, R., Hayn, M., & Giblin, A. (2024). Characterizing Spatial and Temporal Trends in Net Sediment Accumulation in Seagrass Meadows. Estuaries and Coasts. https://doi.org/10.1007/s12237-024-01365-4

Metzger, B., & Özpolat, B. D. (2024). Developmental stage dependent effects of posterior and germline regeneration on sexual maturation in Platynereis dumerilii. Developmental Biology. https://doi.org/10.1016/j.ydbio.2024.05.013

Perillo, M., Alessandro, T., Toscano, A., & Annunziata, R. (2024). Larval development of Holothuria tubulosa, a new tractable system for evo-devo. Frontiers in Ecology and Evolution, 12. https://doi.org/10.3389/fevo.2024.1409174

Whittaker, B., Zeigler, E., Garcia-Mata, R., Wallace, J. N., Morgan, J. R., Rodal, A. A., & Welch, M. D. (2024). From pipette to palette: Bridging science and art at MBoC. Molecular Biology of the Cell, 35(6), ed2. https://doi.org/10.1091/mbc.E24-04-0149

De Niz, M., Escobedo García, R., Terán Ramirez, C., Pakowski, Y., Abonza, Y., Bialy, N., Orr, V. L., Olivera, A., Abonza, V., Alleva, K., Allodi, S., Almeida, M. F., Becerril Cuevas, A. R., Bonnet, F., Burgos Solorio, A., Chew, T.-L., Chiabrando, G., Cimini, B., Cleret-Buhot, A., Jimenez, G. C., Daza, L., De Sa, V., De Val, N., Delgado-Alvarez, D. L., Eliceiri, K., Fiolka, R., Grecco, H., Hanein, D., Herrera, P. H., Hockberger, P., Hernandez, H. O., Guadarrama, Y. H., Itano, M., Jacobs, C. A., Jimenez-Garcia, L. F., Jimenez Sabinina, V., Kamaid, A., Keppler, A., Kumar, A., Lacoste, J., Lovy, A., Luby-Phelps, K., Mahadevan-Jansen, A., Malacrida, L., Mehta, S. B., Miller, C., Miranda, K., Moore, J. A., North, A., O’Toole, P., Olivares Ubano, M., Pietrasanta, L. I., Portugal, R. V., Rossi, A. H., Sanchez Contreras, J., Strambio-De-Castilla, C., Soldevila, G., Vale, B., Vazquez, D., Wood, C., Brown, C. M., & Guerrero, A. (2024). Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy, 294(3), 420–439. https://doi.org/10.1111/jmi.13318

Liguori, A., Korm, S., Profetto, A., Richters, E., & Gribble, K. E. (2024). Maternal age effects on offspring lifespan and reproduction vary within a species. Ecology and Evolution, 14(5), e11287. https://doi.org/10.1002/ece3.11287

Sutherland, K. R., Damian-Serrano, A., Du Clos, K. T., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2024). Spinning and corkscrewing of oceanic macroplankton revealed through in situ imaging. Science Advances, 10(20), eadm9511. https://doi.org/10.1126/sciadv.adm9511

Wilson, S., Moody, A., McKenzie, T., Cardenas, M., Luijendijk, E., Sawyer, A., Wilson, A., Michael, H., Xu, B., Knee, K., Cho, H., Weinstein, Y., Paytan, A., Moosdorf, N., Chen, C., Beck, M., Lopez, C., Murgulet, D., Kim, G., Charette, M. A., Waska, H., Ibanhez, J. S. P., Chaillou, G., Oehler, T., Onodera, S., Saito, M., Rodellas, V., Dimova, N., Montiel, D., Dulai, H., Richardson, C., Du, J., Petermann, E., Chen, X., Davis, K. L., Lamontagne, S., Sugimoto, R., Wang, G., Li, H., Torres, A. I., Demir, C., Bristol, E., Connolly, C. T., McClelland, J. W., Silva, B. J., Tait, D., Kumar, BSK, Viswanadham, R., Sarma, VVSS, Silva-Filho, E., Shiller, A., Lecher, A., Tamborski, J., Bokuniewicz, H., Rocha, C., Reckhart, A., Bottcher, M. E., Jiang, S., Stieglitz, T., Gbewezoun, H. G. V., Charbonnier, C., Anschutz, P., Hernandez-Terrones, L. M., Babu, S., Szymczycha, B., Sadat-Noori, M., Niencheski, F., Null, K., Tobias, C., Song, B., Anderson, I. C., & Santos, I. (2024). Global subterranean estuaries modify groundwater nutrient loading to the ocean. Limnology and Oceanography Letters. https://doi.org/10.1002/lol2.10390

Bullock, E. J., Schaal, I. V., Cardenas, M. B., McClelland, J. W., Henderson, P. B., & Charette, M. A. (2024). Seasonality of submarine groundwater discharge to an Arctic coastal lagoon. Limnology and Oceanography. https://doi.org/10.1002/lno.12585

Sulman, B. N., Wang, J., LaFond-Hudson, S., O’Meara, T. A., Yuan, F., Molins, S., Hammond, G., Forbrich, I., Cardon, Z. G., & Giblin, A. (2024). Integrating Tide-Driven Wetland Soil Redox and Biogeochemical Interactions Into a Land Surface Model. Journal of Advances in Modeling Earth Systems, 16(4), e2023MS004002. https://doi.org/10.1029/2023MS004002

Arkhipova, I., & Yushenova, I. (2023). To be mobile or not: The variety of reverse transcriptases and their recruitment by host genomes. Биохимия, 88(11), 2127–2137. https://doi.org/10.31857/s0320972523110088

Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N., Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guomundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J.-S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jonsdottir, I. S., Juhanson, J., Jung, J. Y., Kaarlejarvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, A., Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Oskarsson, H., Parker, T. C., Pedersen, E. P., Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, R., Rodenhizer, H., Ryde, I., Schmidt, N. M., Schuur, E. A. G., Sjogersten, S., Stark, S., Strack, M., Tang, J., Tolvanen, A., Topper, J. P., Vaisanen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylanne, H., Bjorkman, M. P., Sarneel, J. M., & Dorrepaal, E. (2024). Environmental drivers of increased ecosystem respiration in a warming tundra. Nature. https://doi.org/10.1038/s41586-024-07274-7

Álvarez-Campos, P., García-Castro, H., Emili, E., Pérez-Posada, A., del Olmo, I., Peron, S., Salamanca-Díaz, D. A., Mason, V., Metzger, B., Bely, A. E., Kenny, N. J., Özpolat, B. D., & Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins. Nature Communications, 15, 3194. https://doi.org/10.1038/s41467-024-47401-6

Mantica, F., Iñiguez, L. P., Marquez, Y., Permanyer, J., Torres-Mendez, A., Cruz, J., Franch-Marro, X., Tulenko, F., Burguera, D., Bertrand, S., Doyle, T., Nouzova, M., Currie, P. D., Noriega, F. G., Escriva, H., Arnone, M. I., Albertin, C. B., Wotton, K. R., Almudi, I., Martin, D., & Irimia, M. (2024). Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature Ecology & Evolution. https://doi.org/10.1038/s41559-024-02398-5

O’Shea, R., Capuzzo, E., Hemming, V., Grebe, G., Stafford, R., van den Burg, S. W. K., Wood, D., Watson, G., Wells, V., Johnson, T., Erbs, S., W. van Hal, J., Binnerts, B., Collins, A. M., & Howe, C. (2024). Managing offshore multi-use settings: Use of conceptual mapping to reduce uncertainty of co-locating seaweed aquaculture and wind farms. Journal of Environmental Management, 358, 120696. https://doi.org/10.1016/j.jenvman.2024.120696

Petrova, K., Tretiakov, M., Kotov, A., Monsoro-Burq, A. H., & Peshkin, L. (2024). A new atlas to study embryonic cell types in Xenopus. Developmental Biology. https://doi.org/10.1016/j.ydbio.2024.04.003

Liu, X. J. A., Han, S., Frey, S. D., Melillo, J. M., Zhou, J., & DeAngelis, K. M. (2024). Microbial responses to long-term warming differ across soil microenvironments. ISME Communications, ycae051. https://doi.org/10.1093/ismeco/ycae051

Harbeitner, R. C., Wittmers, F., Yung, C. C. M., Eckmann, C. A., Hehenberger, E., Blum, M., Needham, D. M., & Worden, A. Z. (2024). Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions. PLOS ONE, 19(4), e0298139. https://doi.org/10.1371/journal.pone.0298139

Roberson, L., Grebe, G., Arzeno-Soltero, I., Bailey, D., Chan, S., Davis, K., Goudey, C., Kite-Powell, H., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Rollano, F., Saenz, B., Van Cise, A., Waters, T., Yang, Z., & Yarish, C. (2024). Developing Cultivation Systems and Better Management Practices for Caribbean Tropical Seaweeds in US Waters. In Tropical Phyconomy Coalition Development (Vol. 11, pp. 121–141). Springer Nature. https://doi.org/10.1007/978-3-031-47806-2_11

Wang, T., Du, B., Forbrich, I., Zhou, J., Polen, J., Sunderland, E., Balcom, P., Chen, C., & Obrist, D. (2024). Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA. Biogeosciences, 21(6), 1461–1476. https://doi.org/10.5194/bg-21-1461-2024

Grone, J., Poirier, C., Abbott, K., Wittmers, F., Jaeger, G. S., Mahadevan, A., & Worden, A. Z. (2024). A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth. Environmental Microbiology, 26(3), e16605. https://doi.org/10.1111/1462-2920.16605

Gutiérrez-Ibáñez, C., & Wylie, D. R. (2024). Investigation of central pattern generators in the spinal cord of chicken embryos. Journal of Comparative Physiology A. https://doi.org/10.1007/s00359-024-01694-6

McAllister, C. T., & Remsen, D. (2024). A New State Record for the Milliped, Howellaria infesta (Diplopoda: Polydesmida: Xystodesmidae). Entomological News, 131(2), 61–63. https://doi.org/10.3157/021.131.0201

Minařík, M., Modrell, M. S., Gillis, J. A., Campbell, A. S., Fuller, I., Lyne, R., Micklem, G., Gela, D., Pšenička, M., & Baker, C. V. H. (2024). Identification of multiple transcription factor genes potentially involved in the development of electrosensory versus mechanosensory lateral line organs. Frontiers in Cell and Developmental Biology, 12. https://doi.org/10.3389/fcell.2024.1327924

Sackville, M. A., Gillis, J. A., & Brauner, C. J. (2024). The origins of gas exchange and ion regulation in fish gills: Evidence from structure and function. Journal of Comparative Physiology B. https://doi.org/10.1007/s00360-024-01545-5

Deng, H., He, C., Worden, A. Z., & Gong, J. (2024). Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments. Environmental Microbiology, 26(3), e16615. https://doi.org/10.1111/1462-2920.16615

Diaz Soria, C. L., Attenborough, T., Lu, Z., Fontenla, S., Graham, J., Hall, C., Thompson, S., Andrews, T. G. R., Rawlinson, K. A., Berriman, M., & Rinaldi, G. (2024). Single-cell transcriptomics of the human parasite Schistosoma mansoni first intra-molluscan stage reveals tentative tegumental and stem-cell regulators. Scientific Reports, 14, 5974. https://doi.org/10.1038/s41598-024-55790-3

Giacomini, J. J., Torres-Morales, J., Tang, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2024). Spatial ecology of Haemophilus and Aggregatibacter in the human oral cavity. Microbiology Spectrum, e04017-23. https://doi.org/10.1128/spectrum.04017-23

MacCord, K., & Maienschein, J. (2024). Studying Regeneration Through History as a Way of Looking Forward. Journal of the History of Biology. https://doi.org/10.1007/s10739-024-09769-5

Buresch, K. C., Huget, N. D., Brister, W. C., Zhou, E. Y., Lineaweaver, A. S., Rifai, C., Hu, J., Stevenson, Z. E., Boal, J. G., & Hanlon, R. T. (2024). Evidence for tactile 3D shape discrimination by octopus. Journal of Comparative Physiology A. https://doi.org/10.1007/s00359-024-01696-4

Jarriel, S., Formel, N., Ferguson, S., Jensen, F., Apprill, A., & Mooney, T. (2024). Unidentified fish sounds as indicators of coral reef health and comparison to other acoustic methods. Frontiers in Remote Sensing, 5, 1338586. https://doi.org/10.3389/frsen.2024.1338586

McNellis, R., van Gestel, N., Thomas, R. Q., & Smith, N. G. (2024). Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agroecosystem. Ecosphere, 15(2), e4753. https://doi.org/10.1002/ecs2.4753

Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T., Rice, P. A., Yu, M. K., Mimee, M., Chang, E. B., Ruscheweyh, H.-J., Sunagawa, S., Mclellan, S. L., Willis, A. D., Comstock, L. E., & Eren, A. M. (2024). A cryptic plasmid is among the most numerous genetic elements in the human gut. Cell, 187(5), 1206-1222.e16. https://doi.org/10.1016/j.cell.2024.01.039

McMaken, C. M., & Gribble, K. E. (2024). A free and user-friendly software protocol for the quantification of microfauna swimming behavior. BioTechniques. https://doi.org/10.2144/btn-2024-0001

Yu, M., Fogarty, E., & Eren, A. M. (2024). Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Nature Microbiology, 9(3), 830–847. https://doi.org/10.1038/s41564-024-01610-3

Fricke, A., Bast, F., Moreira-Saporiti, A., Martins Bussanello, G., Msuya, F. E., & Teichberg, M. (2024). Tropical bloom-forming mesoalgae Cladophoropsis sp. And Laurencia sp.—responses to ammonium enrichment and a simulated heatwave. Journal of Phycology. https://doi.org/10.1111/jpy.13435

Henderson, L. C., Wittmers, F., Carlson, C. A., Worden, A. Z., & Close, H. G. (2024). Variable carbon isotope fractionation of photosynthetic communities over depth in an open-ocean euphotic zone. Proceedings of the National Academy of Sciences of the United States of America, 121(10), e2304613121. https://doi.org/10.1073/pnas.2304613121

Hill, A., Schäfer, K., Forbrich, I., & Vargas, R. (2024). Empirical Dynamic Modeling Reveals Complexity of Methane Fluxes in a Temperate Salt Marsh. Journal of Geophysical Research Biogeosciences, 129(2), e2023JG007630. https://doi.org/10.1029/2023jg007630

Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D., Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. Biophysical Journal, 123(3), 290a.https://doi.org/10.1016/j.bpj.2023.11.1808

MacCord, K. (2024, February). Sex Cells. Natural History, 132(2), 30–35.

Nakamura, M., Kyoda, T., Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y., Wlizla, M., Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of InhibinβA and JunB is essential for cell proliferation in Xenopus tadpole tail regeneration. Scientific Reports, 14, 3679.https://doi.org/10.1038/s41598-024-54280-w

Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo. EvoDevo, 15(1), 3.https://doi.org/10.1186/s13227-023-00220-0