2023 Scientific Publications
December 2023
Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D., Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient. mBio. DOI: 10.1128/mbio.02830-23
Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P., Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types. Wetlands. DOI: 10.1007/s13157-023-01751-x
Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., & Maignien, L. (2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications. DOI: 10.1038/s43705-023-00341-6
November 2023
Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y., Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics – Review and research perspectives. Soil Biology and Biochemistry. DOI: 10.1016/j.soilbio.2023.109253
Anthonies, S., & Vargas-Muñiz, J. M. (2022). Hortaea werneckii isolates exhibit different pathogenic potential in the invertebrate infection model Galleria mellonella. Frontiers in Fungal Biology. DOI: 10.3389/ffunb.2022.941691
Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarné, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023. Mobile DNA. DOI: 10.1186/s13100-023-00307-4
Arkhipova, I., & Yushenova, I. (2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes. Biochemistry (Moscow). DOI: 10.1134/s000629792311007x
Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N., Abbo, L., Lindén, S. K., & Wikstrom, J. D. (2023). Mass Spectrometry Analysis of Shark Skin Proteins. International Journal of Molecular Sciences. DOI: 10.3390/ijms242316954
Beca-Carretero, P., Winters, G., Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community. Science of The Total Environment. DOI: 10.1016/j.scitotenv.2023.168675
Haviland, K. A., Hayn, M., & Howarth, R. W. (2023). Lab-based multispectral photography for approximating chlorophyll content in Zostera marina. Limnology and Oceanography: Methods.DOI: 10.1002/lom3.10589
Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., & Worden, A. Z. (2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias. Molecular Biology and Evolution. DOI: 10.1093/molbev/msad251
Rees, J. M., Palmer, M. A., & Gillis, J. A. (2023). Fgf signalling is required for gill slit formation in the skate, Leucoraja erinacea. Developmental Biology. DOI: 10.1016/j.ydbio.2023.11.008
Thayer, R., & Patel, N. (2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production. Journal of Experimental Biology. DOI: 10.1242/jeb.245940
Wallace, J. N., Crockford, Z. C., Román-Vendrell, C., Brady, E. B., Hoffmann, C., Vargas, K. J., Potcoava, M., Wegman, M. E., Alford, S. T., Milovanovic, D., & Morgan, J. R. (2023). Excess Phosphoserine-129 α-Synuclein Induces Synaptic Vesicle Trafficking and Declustering Defects at a Vertebrate Synapse. Molecular Biology of the Cell. DOI: 10.1091/mbc.E23-07-0269
Zheng, J., Mallon, J., Lammers, A., Rados, T., Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea. mBio. DOI: 10.1128/mbio.02272-23
October 2023
Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems. Current Biology. DOI: 10.1016/j.cub.2023.08.092
Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., & Giblin, A. E. (2023). Salt marsh nitrogen cycling: Where land meets sea. Trends in Microbiology. DOI: 10.1016/j.tim.2023.09.010
Cauret, C. M. S., Jordan, D. C., Kukoly, L. M., Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M., Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis. PLOS Genetics. DOI: 10.1371/journal.pgen.1010990
Chancellor, S., Grasse, B., Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology of Octopus bimaculoides Using Dermal Hormones. Animals. DOI: 10.3390/ani13193115
Chavez Ramirez, C., Khoo, M., Lopez G, M., Ferguson, S., Walker, S., & Echeverri, K. (2023). Comparison of Blastema Formation after Injury in Two Cephalopod Species. microPublication Biology. DOI: 10.17912/micropub.biology.000946
Fisher, G., Roman-Vendrell, C., Brady, E., & Morgan, J. (2023). Ɑ-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey. IBRO Neuroscience Reports. DOI: 10.1016/j.ibneur.2023.08.1107
Galarza-Muñoz, G., Soto-Morales, S., Jiao, S., Holmgren, M., & Rosenthal, J. (2023). Molecular determinants for cold adaptation in an Antarctic Na+/K+-ATPase. Proceedings of the National Academy of Sciences of the United States of America.DOI: 10.1073/pnas.2301207120
Learn More: Pumped for Frigid Weather: Discovering Cold Adaptations in the Antarctic Octopus
König, S., Schmidt, N., Bechberger, K., Morris, S., Priego, M., Zaky, H., Song, Y., Pielage, J., Brunholz, S., Brady, S. T., Kins, S., & Morfini, G. (2023). Axon-Autonomous Effects of the Amyloid Precursor Protein Intracellular Domain (AICD) on Kinase Signaling and Fast Axonal Transport. Cells. DOI: 10.3390/cells12192403
LaFountain Jr, J. R., Seaman, C. E., Cohan, C. S., & Oldenbourg, R. (2023). Sliding of antiparallel microtubules drives bipolarization of monoastral spindles. Cytoskeleton.DOI: 10.1002/cm.21800
Marino, R., Hayn, M., Howarth, R. W., Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrass Zostera marina in a temperate lagoon with moderate to high nitrogen loads. Biogeochemistry. DOI: 10.1007/s10533-023-01083-2
Massoud, E., Hoffman, F., Shi, Z., Tang, J., Alhajjar, E., Barnes, M., Braghiere, R., Cardon, Z., Collier, N., Crompton, O., Dennedy-Frank, P., Gautam, S., Gonzalez-Meler, M., Green, J., Koven, C., Levine, P., MacBean, N., Mao, J., Mills, R., Mishra, U., Mudunuru, M., Renchon, A. A., Scott, S., Siirila-Woodburn, E. R., Sprenger, M., Tague, C., Wang, Y., Xu, C., & Zarakas, C. (2023). Perspectives on Artificial Intelligence for Predictions in Ecohydrology. Artificial Intelligence for the Earth Systems. DOI: 10.1175/aies-d-23-0005.1
Jimenez-Guri, E., Murano, C., Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchin Paracentrotus lividus. Marine Pollution Bulletin. DOI: 10.1016/j.marpolbul.2023.115604
Pérez Castro, S., Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B., Ganesh, A., Ruff, S., Paul, B., Giblin, A., & Cardon, Z. (2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes. Applied and Environmental Microbiology. DOI: 10.1128/aem.00988-23
Learn More: Analysis Finds Diversity on the Smallest Scales in Sulfur-Cycling Salt Marsh Microbes
Ruff, S., & Baker, B. (2023). Editorial: Rising stars in hydrothermal vents and cold seeps: 2021. Frontiers in Microbiology. DOI: 10.3389/fmicb.2023.1297372
Strauss, J., Deng, L., Gao, S., Toseland, A., Bachy, C., Zhang, C., Kirkham, A., Hopes, A., Utting, R., Joest, E. F., Tagliabue, A., Löw, C., Worden, A. Z., Nagel, G., & Mock, T. (2023). Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans. Nature Microbiology.DOI: 10.1038/s41564-023-01498-5
Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., & McClelland, J. (2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA. Hydrobiologia. DOI: 10.1007/s10750-023-05388-z
Wu-Woods, N. J., Barlow, J. T., Trigodet, F., Shaw, D. G., Romano, A. E., Jabri, B., Eren, A. M., & Ismagilov, R. F. (2023). Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples. Nature Methods. DOI: 10.1038/s41592-023-02025-4
Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A., Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice. International Journal of Molecular Sciences. DOI: 10.3390/ijms242115510
September 2023
Bachar-Wikstrom, E., Thomsson, K. A., Sihlbom, C., Abbo, L., Tartor, H., Lindén, S. K., & Wikstrom, J. D. (2023). Identification of Novel Glycans in the Mucus Layer of Shark and Skate Skin. International Journal of Molecular Sciences. DOI: 10.3390/ijms241814331
Baker, J. L., Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X. (2023). The oral microbiome: Diversity, biogeography and human health. Nature Reviews Microbiology. DOI: 10.1038/s41579-023-00963-6
Guimond, J. A., Demir, C., Kurylyk, B. L., Walvoord, M. A., McClelland, J. W., & Cardenas, M. B. (2023). Wind-modulated groundwater discharge along a microtidal Arctic coastline. Environmental Research Letters. DOI: 10.1088/1748-9326/acf0d8
Lee, J. S., Lowell, J. L., Whitewater, K., Roane, T. M., Miller, C. S., Chan, A. P., Sylvester, A. W., Jackson, D., & Hunter, L. E. (2023). Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework. Molecular Ecology Resources. DOI: 10.1111/1755-0998.13867
Moon, T., Thoman, R., Druckenmiller, M., Ahmasuk, B., Backensto, S., Ballinger, T., Benestad, R., Berner, L., Bernhard, G., Bhatt, U., Bigalke, S., BjerkeJarle, W., Brettschneider, B., Christiansen, H., Cohen, J., Decharme, B., Derksen, C., Divine, D., Drost, J., Druckenmiller, M. L., EliasChereque, A., Epstein, H. E., Fausto, R. S., Fettweis, X., Fioletov, V. E., Forbes, B. C., Frost, G. V., Gerland, S., Goetz, S. J., Grooß, J.-U., Hanna, E., Hanssen-Bauer, I., Hendricks, S., Holmes, R. M., Ialongo, I., Isaksen, K., Johnsen, B., Jones, T., Kaler, R. S. A., Kaleschke, L., Kim, S.-J., Labe, Z. M., Lader, R., Lakkala, K., Lara, M. J., Lindsey, J., Loomis, B. D., Luojus, K., Macander, M. J., Mamen, J., Mankoff, K. D., Manney, G. L., McAfee, S. A., McClelland, J. W., Meier, W. N., Moon, T. A, Moore, G. W. K., Mote, T. L., Mudryk, L., Muller, R., Nyland, K. E., Overland, J. E., Parrish, J. K., Perovich, D. K., Petersen, G. N., Petty, A., Phoenix, G. K., Poinar, K., Rantanen, M., Ricker, R., Romanovsky, V. E., Serbin, S. P., Serreze, M. C., Sheffield, G., Shiklomanov, A. I., Shiklomanov, N. I., Smith, S. L., Spencer, R. G. M., Streletskiy, D. A., Suslova, A., Svendby, T., Tank, S. E., Tedesco, M., Thoman, R. L., Tian-Kunze, X., Timmermans, M.-L., Tommervik, H., Tretiakov, M., Walker, D. A., Walsh, J. E., Wang, M., Webster, M., Wehrle, A., Yang, D., Zolkos, S., Allen, J., Camper, A. V., Haley, B. O., Hammer, G., Love-Brotak, S., Ohlmann, L., Noguchi, L., Riddle, D. B., & Veasey, S. (2023). “The Arctic” in State of the Climate 2022. Bulletin of the American Meteorological Society. DOI: 10.1175/bams-d-23-0079.1
Peña-Montenegro, T. D., Kleindienst, S., Allen, A. E., Eren, A. M., McCrow, J. P., Sánchez-Calderón, J. D., Arnold, J., & Joye, S. B. (2023). Species-specific responses of marine bacteria to environmental perturbation. ISME Communications. DOI: 10.1038/s43705-023-00310-z
Strock, S., Costello, J. H., Daniels, J., Katija, K., & Colin, S. P. (2023). Nectophore coordination and kinematics by physonect siphonophores. Journal of Experimental Biology. DOI: 10.1242/jeb.245955
Tarrés, M., Cerdà-Domènech, M., Pedrosa-Pàmies, R., Baza-Varas, A., Calafat, A., Sanchez-Vidal, A., & Canals, M. (2023). Transport and distributions of naturally and anthropogenically sourced trace metals and Arsenic in submarine canyons. Progress In Oceanography. DOI: 10.1016/j.pocean.2023.103122
Zhang, Y., Ruff, S. E., Oskolkov, N., Tierney, B. T., Ryon, K., Danko, D., Mason, C. E., & Elhaik, E. (2023). The microbial biodiversity at the archeological site of Tel Megiddo (Israel). Frontiers in Microbiology. DOI: 10.3389/fmicb.2023.1253371
August 2023
Brady, S. T., Mesnard-Hoaglin, N. A., Priego, M., Dziechciowska, J., Morris, S., Kang, M., Tsai, M. Y., Purks, J. L., Klein, A., Gaona, A., Melloni, A., Connors, T., Hyman, B., Song, Y., & Morfini, G. A. (2023). Toxic effects of mutant huntingtin in axons are mediated by its proline-rich domain. Brain. DOI: 10.1093/brain/awad280
Clark, J., Mannino, A., Spencer, R., Tank, S., & McClelland, J. (2023). Quantification of Discharge‐Specific Effects on Dissolved Organic Matter Export From Major Arctic Rivers From 1982 Through 2019. Global Biogeochemical Cycles. DOI: 10.1029/2023gb007854
Fakhri, A. M., Warner, M. H., DeGiorgis, J. A., & Cornely, K. (2023). Mycobacteriophage Rita: A cluster F1 phage discovered in North Easton, Massachusetts. Microbiology Resource Announcements. DOI: 10.1128/MRA.00510-23
Gillis, J. A. (2023). Scales, scutes, and embryonic origins of the vertebrate dermal skeleton. Proceedings of the National Academy of Sciences.. DOI: 10.1073/pnas.2310552120
Maienschein, J. (2023). Garland Allen’s Last Book Project. Journal of the History of Biology. DOI: 10.1007/s10739-023-09726-8
Neher, W., Rasmussen, C., Braybrook, S., Lažetić, V., Stowers, C., Mooney, P., Sylvester, A., & Springer, P. (2023). The maize preligule band is subdivided into distinct domains with contrasting cellular properties prior to ligule outgrowth. Development. DOI: 10.1242/dev.201608
Rand, D. M., Nunez, J. C. B., Williams, S., Rong, S., Burley, J. T., Neil, K. B., Spierer, A. N., McKerrow, W., Johnson, D. S., Raynes, Y., Fayton, T. J., Skvir, N., Ferranti, D. A., Zeff, M. G., Lyons, A., Okami, N., Morgan, D. M., Kinney, K., Brown, B. R. P., Giblin, A. E., & Cardon, Z. G. (2023). Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system. Molecular Ecology. DOI: 10.1111/mec.17093
Learn more: New Study Shows How Parasites Turn Tiny Brown Amphipods into Neon Zombies
Rastetter, E. B., Griffin, K. L., Kwiatkowski, B. L., & Kling, G. W. (2023). Ecosystem feedbacks constrain the effect of day-to-day weather variability on land–atmosphere carbon exchange. Global Change Biology. DOI: 10.1111/gcb.16926
Saffer, A. M., Baskin, T. I., Verma, A., Stanislas, T., Oldenbourg, R., & Irish, V. F. (2023). Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition. The Plant Journal. DOI: 10.1111/tpj.16414
Schön, I., Fontaneto, D., & Peredo, E. (2023). Microbiomes of aquatic animals. Hydrobiologia.DOI: 10.1007/s10750-023-05328-x
Tank, S. E., McClelland, J. W., Spencer, R. G. M., Shiklomanov, A. I., Suslova, A., Moatar, F., Amon, R. M. W., Cooper, L. W., Elias, G., Gordeev, V. V., Guay, C., Gurtovaya, T. Yu., Kosmenko, L. S., Mutter, E. A., Peterson, B. J., Peucker-Ehrenbrink, B., Raymond, P. A., Schuster, P. F., Scott, L., Staples, R., Striegl, R. G., Tretiakov, M., Zhulidov, A. V., Zimov, N., Zimov, S., & Holmes, R. M. (2023). Recent trends in the chemistry of major northern rivers signal widespread Arctic change. Nature Geoscience. DOI: 10.1038/s41561-023-01247-7
Learn more: Decades-Long Arctic Rivers Study Conceived at MBL Reveals Widespread Change
Van Bruggen, S., Jarrot, P.-A., Thomas, E., Sheehy, C. E., Silva, C. M. S., Hsu, A. Y., Cunin, P., Nigrovic, P. A., Gomes, E. R., Luo, H. R., Waterman, C. M., & Wagner, D. D. (2023). NLRP3 is essential for neutrophil polarization and chemotaxis in response to leukotriene B4 gradient. Proceedings of the National Academy of Sciences. DOI: 10.1073/pnas.2303814120
Voss, G., & Rosenthal, J. J. C. (2023). High-level RNA editing diversifies the coleoid cephalopod brain proteome. Briefings in Functional Genomics. DOI: 10.1093/bfgp/elad034
July 2023
Allsman, L., Bellinger, M., Huang, V., Duong, M., Contreras, A., Romero, A., Verboonen, B., Sidhu, S., Zhang, X., Steinkraus, H., Uyehara, A., Martinez, S., Sinclair, R., Soriano, G., Diep, B., V., D., Noriega, A., Drakakaki, G., Sylvester, A., & Rasmussen, C. (2023). Subcellular positioning during cell division and cell plate formation in maize. Frontiers in Plant Science. DOI: 10.3389/fpls.2023.1204889
Arredondo, M., Fang, Y., Jones, M., Yabusaki, S., Cardon, Z., & Keiluweit, M. (2023). Resolving dynamic mineral-organic interactions in the rhizosphere by combining in-situ microsensors with plant-soil reactive transport modeling. Soil Biology and Biochemistry. DOI: 10.1016/j.soilbio.2023.109097
Feng, H., Bavister, G., Gribble, K. E., & Welch, D. B. M. (2023). Highly efficient CRISPR-mediated gene editing in a rotifer. PLOS Biology. DOI: 10.1371/journal.pbio.3001888
Learn more: Powerful Gene Editing Approach Boosts Rotifers in Pantheon of Laboratory Animals
Fujita, R., Augyte, S., Bender, J., Brittingham, P., Buschmann, A. H., Chalfin, M., Collins, J., Davis, K. A., Gallagher, J. B., Gentry, R., Gruby, R. L., Kleisner, K., Moritsch, M., Price, N., Roberson, L., Taylor, J., & Yarish, C. (2023). Seaweed blue carbon: Ready? Or Not? Marine Policy. DOI: 10.1016/j.marpol.2023.105747
Holland, P., Langdale, J., Patel, N., & Stone, G. (2023). Discovery of the bicycle gene family provides new insights into insect manipulation of plant development during gall induction. Faculty Reviews. DOI: 10.12703/r-01-0000022
Kosmopoulos, J. C., Campbell, D. E., Whitaker, R. J., & Wilbanks, E. G. (2023). Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in “Pink Berry” Marine Microbial Aggregates. Applied and Environmental Microbiology. DOI: 10.1128/aem.00177-23
Lewis, T. R., Phan, S., Castillo, C. M., Kim, K.-Y., Coppenrath, K., Thomas, W., Hao, Y., Skiba, N. P., Horb, M. E., Ellisman, M. H., & Arshavsky, V. Y. (2023). Photoreceptor disc incisures form as an adaptive mechanism ensuring the completion of disc enclosure. eLife. DOI:10.7554/eLife.89160
McGillivary, R. M., Sood, P., Hammar, K., & Marshall, W. F. (2023). The nuclear transport factor CSE1 drives macronuclear volume increase and macronuclear node coalescence in Stentor coeruleus. IScience DOI: 10.1016/j.isci.2023.107318
Mugnaini, M., Mehrotra, D., Davoine, F., Sharma, V., Mendes, A. R., Gerhardt, B., Concha-Miranda, M., Brecht, M., & Clemens, A. M. (2023). Supra-orbital whiskers act as wind-sensing antennae in rats. PLoS Biology. DOI: 10.1371/journal.pbio.3002168
Learn more: Rats Sense the Wind with Antennae-like Whiskers Above their Eyes
Steinbach, R., Baidouri, F., Mitchison-Field, L., Lim, F., Ekena, J., Vogt, E., Gladfelter, A., Theberge, A., & Amend, A. (2023). Malassezia is widespread and has undescribed diversity in the marine environment. Fungal Ecology. DOI: 10.1016/j.funeco.2023.101273
Valiela, I., Lloret, J., & Chenoweth, K. (2023). Effects of Climate Change on Salt Marshes. In Climate Change and Estuaries (1st Edition, pp. 355–380). Taylor & Francis. DOI: 10.1201/9781003126096-21
June 2023
Ahuja, N., Hwaun, E., Pungor, J. R., Rafiq, R., Nemes, S., Sakmar, T., Vogt, M. A., Grasse, B., Quiroz, J. D., Montague, T. G., Null, R. W., Dallis, D. N., Gavriouchkina, D., Marletaz, F., Abbo, L., Rokhsar, D. S., Niell, C. M., Soltesz, I., Albertin, C. B., & Rosenthal, J. J. C. (2023). Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity. Current Biology. DOI: 10.1016/j.cub.2023.05.066
Learn More: See-through Squid Lets Scientists Study Cephalopod Nervous System
Arkhipova, I., Yushenova, I., & Rodriguez, F. (2023). Shaping eukaryotic epigenetic systems by horizontal gene transfer. Bioessays. DOI: 10.1002/bies.202200232
Baden, T., Briseño, J., Coffing, G., Cohen-Bodénès, S., Courtney, A., Dickerson, D., Dölen, G., Fiorito, G., Gestal, C., Gustafson, T., Heath-Heckman, E., Hua, Q., Imperadore, P., Kimbara, R., Król, M., Lajbner, Z., Lichilín, N., Macchi, F., McCoy, M. J., Nishiguchi, M. K., Nyholm, S. V., Otjacques, E., Perez-Ferrer, P. A., Ponte, G., Pungor, J. R., Rogers, T. F., Rosenthal, J. J. C., Rouressol, L., Rubas, N., Sanchez, G., Santos, C. P., Schultz, D. T., Seuntjens, E., Songco-Casey, J. O., Stewart, I. E., Styfhals, R., Tuanapaya, S., Vijayan, N., Weissenbacher, A., Zifcakova, L., Schulz, G., Weertman, W., Simakov, O., & Albertin, C. (2023). Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology. Integrative and Comparative Biology. DOI: 10.1093/icb/icad087
Birk, M. A., Liscovitch-Brauer, N., Dominguez, M. J., McNeme, S., Yue, Y., Hoff, J. D., Twersky, I., Verhey, K. J., Sutton, R. B., Eisenberg, E., & Rosenthal, J. J. C. (2023). Temperature-dependent RNA editing in octopus extensively recodes the neural proteome. Cell. DOI: 10.1016/j.cell.2023.05.004
Learn more: Masters of Acclimation: Octopuses Adjust to Cold by Editing their RNA
Eckmann, C. A., Eberle, J. S., Wittmers, F., Wilken, S., Bergauer, K., Poirier, C., Blum, M., Makareviciute-Fichtner, K., Jimenez, V., Bachy, C., Vermeij, M. J. A., & Worden, A. Z. (2023). Eukaryotic algal community composition in tropical environments from solar salterns to the open sea. Frontiers in Marine Science. DOI: 10.3389/fmars.2023.1131351
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Miller, S. E., Colman, A. S., & Waldbauer, J. R. (2023). Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. MSystems. DOI: 10.1128/msystems.01238-22
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Learn more: Life Below Our Feet: Team Discovers Microbes Thriving in Groundwater, Producing Oxygen in the Dark
Strauss, J., Choi, C. J., Grone, J., Wittmers, F., Jimenez, V., Makareviciute-Fichtner, K., Bachy, C., Jaeger, G. S., Poirier, C., Eckmann, C., Spezzano, R., Löscher, C. R., Sarma, V. V. S. S., Mahadevan, A., & Worden, A. Z. (2023). The Bay of Bengal exposes abundant photosynthetic picoplankton and newfound diversity along salinity-driven gradients. Environmental Microbiology. DOI: 10.1111/1462-2920.16431
Torres-Morales, J., Mark Welch, J. L., Dewhirst, F. E., & Borisy, G. G. (2023). Site-specialization of human oral Gemella species. Journal of Oral Microbiology. DOI: 10.1080/20002297.2023.2225261
Vallecillo-Viejo, I. C., Voss, G., Albertin, C. B., Liscovitch-Brauer, N., Eisenberg, E., & Rosenthal, J. J. C. (2023). Squid express conserved ADAR orthologs that possess novel features. Frontiers in Genome Editing. DOI: 10.3389/fgeed.2023.1181713
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Wilken, S., Yung, C. C. M., Poirier, C., Massana, R., Jimenez, V., & Worden, A. Z. (2023). Choanoflagellates alongside diverse uncultured predatory protists consume the abundant open-ocean cyanobacterium Prochlorococcus. Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.2302388120
May 2023
Afzal, Z., Lange, J. J., Nolte, C., McKinney, S., Wood, C., Paulson, A., De Kumar, B., Unruh, J., Slaughter, B. D., & Krumlauf, R. (2023). Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube. Development. DOI: 10.1242/dev.201259
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Bos, R. P., Kaul, D., Zettler, E. R., Hoffman, J. M., Dupont, C. L., Amaral-Zettler, L. A., & Mincer, T. J. (2023). Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients. Environmental Microbiology. DOI: 10.1111/1462-2920.16391
Dimitrakopoulou, D., Khwatenge, C. N., James-Zorn, C., Paiola, M., Bellin, E. W., Tian, Y., Sundararaj, N., Polak, E. J., Grayfer, L., Barnard, D., Ohta, Y., Horb, M., Sang, Y., & Robert, J. (2023). Advances in the Xenopus immunome: Diversification, expansion, and contraction. Developmental & Comparative Immunology. DOI: 10.1016/j.dci.2023.104734
Hubbard, C. J., Harrison, J. G., McMinn, R., Bennett Ponsford, J. C., Maignien, L., Ewers, B., & Weinig, C. (2023). Rhizosphere microbial community composition shifts diurnally and in response to natural variation in host clock phenotype. mSystems DOI: 10.1128/msystems.01487-21
Jum’ah, H., Shribak, M., Keikhosravi, A., Li, B., Liu, Y., Obaidat, D., Eliceiri, K. W., Loeffler, A., & Ayub, S. (2023). Detection of crystals in joint fluid aspirates with polychromatic polarisation microscopy. Annals of the Rheumatic Diseases. DOI: 10.1136/ard-2023-224331
Maienschein, J. (2023). The Camouflaged Metaphysics of Embryos. Issues in Science and Technology.DOI: 10.58875/cnst5707
Maxson Jones, K., & Morgan, J. R. (2023). Lampreys and spinal cord regeneration: “A very special claim on the interest of zoologists,” 1830s-present. Frontiers in Cell and Developmental Biology. DOI: 10.3389/fcell.2023.1113961
Min, E., Naeem, S., Gough, L., McLaren, J., Rowe, R., Rastetter, E., Boelman, N., & Griffin, K. (2023). Using structure to model function: Incorporating canopy structure improves estimates of ecosystem carbon flux in arctic dry heath tundra. Environmental Research Letters. DOI: 10.1088/1748-9326/acceb6
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Learn more: A ‘Pathogen’ Storm: Vibrio Bacteria, Sargassum and Plastic Debris
Nichols, R. S., Moynihan, M. A., & Martin, P. (2023). Alkaline phosphatase activity in an equatorial coral reef ecosystem unrelated to seasonal nutrient dynamics. Coral Reefs. DOI: 10.1007/s00338-023-02383-7
Perillo, M., Swartz, S. Z., Pieplow, C., & Wessel, G. M. (2023). Molecular mechanisms of tubulogenesis revealed in the sea star hydro-vascular organ. Nature Communications. DOI: 10.1038/s41467-023-37947-2
Learn more: Basic ‘Toolkit’ for Organ Development is Illuminated by Sea Star Study
Satterlee, J. W., Evans, L. J., Conlon, B. R., Conklin, P., Martinez-Gomez, J., Yen, J. R., Wu, H., Sylvester, A. W., Specht, C. D., Cheng, J., Johnston, R., Coen, E., & Scanlon, M. J. (2023). A Wox3-patterning module organizes planar growth in grass leaves and ligules. Nature Plants.DOI: 10.1038/s41477-023-01405-0
Tamm, S. (2023). Morphology and dynamic behavior of anal pores during defecation in the ctenophore Pleurobrachia pileus. Invertebrate Biology. DOI: 10.1111/ivb.12397
April 2023
Cayemitte, K., Aoki, N., Ferguson, S. R., Mooney, T. A., & Apprill, A. (2023). Ramicrusta invasive alga causes mortality in Caribbean coral larvae. Frontiers in Marine Science. DOI: 10.3389/fmars.2023.1158947
Gollnisch, R., Wallenius, J., Gribble, K. E., Ahrén, D., & Rengefors, K. (2023). SAG-RAD: A method for single-cell population genomics of unicellular eukaryotes. Molecular Biology and Evolution. DOI: 10.1093/molbev/msad095
Gould, R., & Brady, S. (2023). Identifying mRNAs Residing in Myelinating Oligodendrocyte Processes as a Basis for Understanding Internode Autonomy. Life. DOI: 10.3390/life13040945
Ghousein, A., Tutagata, J., Schrieke, H., Etienne, M., Chaumeau, V., Boyer, S., Pages, N., Roiz, D., Eren, A. M., Cambray, G., & Reveillaud, J. (2023). PWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex pipiens and Culex quinquefasciatus mosquitoes worldwide. ISME Communications. DOI: 10.1038/s43705-023-00248-2
Lundgren, S. N., Madan, J. C., Karagas, M. R., Morrison, H. G., Christensen, B. C., & Hoen, A. G. (2023). Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life. Frontiers in Microbiology. DOI: 10.3389/fmicb.2023.1164553
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Papenbrock, J., & Teichberg, M. (2023). Editorial: Current advances in seagrass research. Frontiers in Plant Science. DOI: 10.3389/fpls.2023.1196437
Watson, A. R., Füssel, J., Veseli, I., DeLongchamp, J. Z., Silva, M., Trigodet, F., Lolans, K., Shaiber, A., Fogarty, E., Runde, J. M., Quince, C., Yu, M. K., Söylev, A., Morrison, H. G., Lee, S. T. M., Kao, D., Rubin, D. T., Jabri, B., Louie, T., & Eren, A. M. (2023). Metabolic independence drives gut microbial colonization and resilience in health and disease. Genome Biology. DOI: 10.1186/s13059-023-02924-x
March 2023
Avram-Shperling, A., Kopel, E., Twersky, I., Gabay, O., Ben-David, A., Karako-Lampert, S., Rosenthal, J. J. C., Levanon, E. Y., Eisenberg, E., & Ben-Aroya, S. (2023). Identification of exceptionally potent adenosine deaminases RNA editors from high body temperature organisms. PLOS Genetics. DOI: 10.1371/journal.pgen.1010661
Brady, E. B., McQuillan, M., Medeiros, A. T., Bubacco, L., Sousa, R., Lafer, E. M., & Morgan, J. R. (2023). Hsc70 rescues the synaptic vesicle trafficking defects caused by α-synuclein dimers. MicroPublication Biology. DOI: 10.17912/micropub.biology.000737
Cai, L., McGuire, N. E., Hanlon, R., Mooney, T. A., & Girdhar, Y. (2023). Semi-supervised Visual Tracking of Marine Animals Using Autonomous Underwater Vehicles. International Journal of Computer Vision. DOI: 10.1007/s11263-023-01762-5
Carden, L., Lloret, J., & Kidwell, S. M. (2023). Dead molluscan shells from multiple trophic groups as archives of nitrogen isotopic evidence of wastewater gradients in estuaries. Marine Pollution Bulletin. DOI: 10.1016/j.marpolbul.2023.114752
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Kicklighter, D., Lin, T.-S., Zhang, J., Chen, M., Vörösmarty, C., Jain, A., & Melillo, J. (2023). Influence of forest infrastructure on the responses of ecosystem services to climate extremes in the Midwest and Northeast United States from 1980 to 2019. Frontiers in Environmental Science. DOI: 10.3389/fenvs.2023.1069451
Kwiatkowski, E. R., Schnytzer, Y., Rosenthal, J. J. C., & Emery, P. (2023). Behavioral circatidal rhythms require Bmal1 in Parhyale hawaiensis. Current Biology. DOI: 10.1016/j.cub.2023.03.015
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Subramanian, E., Elewa, A., Brito, G., Kumar, A., Segerstolpe, Å., Karampelias, C., Björklund, Å., Sandberg, R., Echeverri, K., Lui, W.-O., Andersson, O., & Simon, A. (2023). A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration. Developmental Cell. DOI:10.1016/j.devcel.2023.02.007
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Walker, S., Santos-Ferreira, T., & Echeverri, K. (2023). A Reproducible Spinal Cord Crush Injury in the Regeneration-Permissive Axolotl. In A. J. Udvadia & J. B. Antczak (Eds.), Axon Regeneration: Methods and Protocols. Springer US. DOI: 10.1007/978-1-0716-3012-9_13
Wang, H., Swore, J., Sharma, S., Szymanski, J. R., Yuste, R., Daniel, T. L., Regnier, M., Bosma, M. M., & Fairhall, A. L. (2023). A complete biomechanical model of Hydra contractile behaviors, from neural drive to muscle to movement. Proceedings of the National Academy of Sciences. DOI: 10.1073/pnas.2210439120
February 2023
Cannon, K. S., Vargas-Muniz, J. M., Billington, N., Seim, I., Ekena, J., Sellers, J. R., & Gladfelter, A. S. (2023). A gene duplication of a septin reveals a developmentally regulated filament length control mechanism. Journal of Cell Biology. DOI: 10.1083/jcb.202204063
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Gainett, G., Klementz, B., Blaszczyk, P., Bruce, H., Patel, N., & Sharma, P. (2023). Dual functions of labial resolve the Hox logic of chelicerate head segments. Molecular Biology and Evolution. DOI: 10.1093/molbev/msad037
Garner, R. M., Molines, A. T., Theriot, J. A., & Chang, F. (2023). Vast heterogeneity in cytoplasmic diffusion rates revealed by nanorheology and Doppelgänger simulations. Biophysical Journal. DOI: 10.1016/j.bpj.2023.01.040
Kiefl, E., Esen, O., Miller, S., Kroll, K., Willis, A., Rappé, M., Pan, T., & Eren, A. (2023). Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution. Science Advances. DOI: 10.1126/sciadv.abq4632
Panlilio, J. M., Hammar, K. M., Aluru, N., & Hahn, M. E. (2023). Developmental exposure to domoic acid targets reticulospinal neurons and leads to aberrant myelination in the spinal cord. Scientific Reports. DOI: 10.1038/s41598-023-28166-2
Putland R.L., Mooney T.A. and Mensinger A.F. (2023) Vessel Sound Causes Hearing Loss for Hummingbird Bobtail Squid (Euprymna berryi). Frontiers in Marine Science. DOI: 10.3389/fmars.2023.1151605
Learn More: What’s That Sound? Ocean Noise Associated With Hearing Loss in Bobtail Squid
Rosenthal, J. J. C., & Eisenberg, E. (2023). Extensive Recoding of the Neural Proteome in Cephalopods by RNA Editing. Annual Review of Animal Biosciences. DOI: 10.1146/annurev-animal-060322-114534
Vörösmarty, C., Melillo, J., Wuebbles, D., Jain, A., Ando, A., Chen, M., Tuler, S., Smith, R., Kicklighter, D., Corsi, F., Fekete, B., Miara, A., Bokhari, H., Chang, J., Lin, T.-S., Maxfield, N., Sanyal, S., Zhang, J., & Vignoles, D. (2023). The C-FEWS framework: Supporting studies of climate-induced extremes on food, energy, and water systems at the regional scale. Frontiers in Environmental Science. DOI: 10.3389/fenvs.2023.1069613
January 2023
Chaouni, B., Idrissi Azami, A., Raoui, S., Amzazi, S., Nejjari, C., Bakkali, F., Zaid, E. H., Hamamouch, N., Amaral-Zettler, L., & Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments. Scientific Reports. doi.org/10.1038/s41598-022-27263-y
Giacomini, J. J., Torres-Morales, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2023). Site Specialization of Human Oral Veillonella Species. Microbiology Spectrum. doi.org/10.1128/spectrum.04042-22
Li, X., Wu, Y., Su, Y., Rey-Suarez, I., Matthaeus, C., Updegrove, T., Wei, Z., Zhang, L., Sasaki, H., Li, Y., Guo, M., Giannini, J., Vishwasrao, H., Chen, J., Lee, S.-J., Shao, L., Liu, H., Ramamurthi, K., Taraska, J., Upadhyaya, A., La Riviere, P., & Shroff, H. (2023). Three-dimensional structured illumination microscopy with enhanced axial resolution. Nature Biotechnology. doi.org/10.1038/s41587-022-01651-1
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Martens, K., Shribak, M., Arkhipova, I., & Schön, I. (2023). The common morphospecies Cypridopsis vidua (O.F. MÜLLER, 1776) (Crustacea, Ostracoda) is not an obligate parthenogen. Belgian Journal of Zoology. doi.org/10.26496/bjz.2023.107
Quiroz, J., Siskel, L., & Rosenthal, J. (2023). Site-directed A→I RNA editing as a therapeutic tool: Moving beyond genetic mutations. RNA. doi.org/10.1261/rna.079518.122
Shi, W., Cannon, K. S., Curtis, B. N., Edelmaier, C., Gladfelter, A. S., & Nazockdast, E. (2023). Curvature sensing as an emergent property of multiscale assembly of septins. Proceedings of the National Academy of Sciences of the United States of America. doi.org/10.1073/pnas.2208253120
Valiela, I., Chenoweth, K., Lloret, J., Teal, J., Howes, B., & Toner, D. G. (2023). Salt marsh vegetation change during a half-century of experimental nutrient addition and climate-driven controls in Great Sippewissett Marsh. The Science of the Total Environment. doi.org/10.1016/j.scitotenv.2023.161546
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Viana, I. G., Artika, S. R., Moreira-Saporiti, A., & Teichberg, M. (2023). Limited trait responses of a tropical seagrass to the combination of increasing pCO2 and warming. Journal of Experimental Botany. doi.org/10.1093/jxb/erac425